blue screen error ntfs

Hello everyone, I do not know how to explain this thing:
I have 2 hard drives from 80 GB on a secondary ide channel and the other of 300 gb on the primary channel. in these 2 hard drives are installed respectively in fat32 windows 2000 and the second hard drive windows xp, vista and other windows 2000 and so far so good ...
The strange thing is that if I start windows 2000 or xp from second hard disk all right but if I start the windows vista (tried also Windows 7) happens to me that the partition of the hard disk starts saying MFT master file table and says invalid descriptor protection / sid correct ...... But I skipped the operating system ... Now I doubt that the problem is caused by formatting ntfs windows 2000 version 5.1 is not compatible with Windows Vista / 7 using ntfs 6.1,After that blue screen says which do you think?

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