Can't install updates, Windows Features list is blank. System Readiness Tool fails


New Member
Basically I can't install most updates (specifically one that says it's critical and allows remote command execution :() and my Windows Features list (where you go to install IIS etc) is blank. The system readiness tool creates the following log:

Checking System Update Readiness.
Binary Version 6.1.7100.4104
Package Version 5.0
2009-09-30 23:38

Checking Deployment Packages

Checking Package Manifests and catalogs.
(f)    CBS MUM Corrupt    0x800F0900    servicing\packages\Package_1_for_KB973540~31bf3856ad364e35~amd64~~        Line 1: 
(f)    CBS Catalog Corrupt    0x800B0100    servicing\packages\        
(f)    CBS MUM Corrupt    0x800F0900    servicing\packages\Package_for_KB973540_RTM~31bf3856ad364e35~amd64~~        Line 1: 
(f)    CBS Catalog Corrupt    0x800B0100    servicing\packages\        
(f)    CBS MUM Corrupt    0x800F0900    servicing\packages\Package_for_KB973540~31bf3856ad364e35~amd64~~        Line 1: 
(f)    CBS Catalog Corrupt    0x800B0100    servicing\packages\        

Checking package watchlist.

Checking component watchlist.

Checking packages.

Checking component store
(f)    CSI Catalog Corrupt    0x800B0003    winsxs\Catalogs\    5fbf0b9691b..6772f1b0a58_31bf3856ad364e35_6.1.7100.4127_c2160c1f90006ee6    
(f)    CSI Manifest All Zeros    0x00000000    WinSxS\Manifests\amd64_microsoft-windows-mediaplayer-wmpdxm_31bf3856ad364e35_6.1.7100.4127_none_35ba254677b2a294.manifest    amd64_microsoft-windows-mediaplayer-wmpdxm_31bf3856ad364e35_6.1.7100.4127_none_35ba254677b2a294    
(f)    CSI Manifest All Zeros    0x00000000    WinSxS\Manifests\wow64_microsoft-windows-mediaplayer-wmpdxm_31bf3856ad364e35_6.1.7100.4127_none_400ecf98ac13648f.manifest    wow64_microsoft-windows-mediaplayer-wmpdxm_31bf3856ad364e35_6.1.7100.4127_none_400ecf98ac13648f    
Seconds executed: 240
 Found 9 errors
  CSI Manifest All Zeros Total Count: 2
  CSI Catalog Corrupt Total Count: 1
  CBS MUM Corrupt Total Count: 3
  CBS Catalog Corrupt Total Count: 3
Any ideas on how to fix this?
Thanks in advance

sfc /scannow >> Check protected files
chkdsk c: /r >> Repair filesystem

Both will take awhile to run.

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