I went to the operational diagonstic and it had several critical and error messages. The critical messages typically just logged that the boot up was slow. Each log indicated that boot was 1-3 minutes long.
A couple of the error messages indicated that particular components were loading very slowly and they were flagged as degredation.
It looks like the initial really long boots were caused by the SCSI drivers take a long time to initialize. This is probably due to me using the RAID setup. I never had to provide it with raid drivers during the installation process because I installed from the windows 7 beta onto my raid HDD. The beta was on a slower HDD, but the raid setup was still with the system.
I noticed that the drives were...