I would say if it doesn't want the most current file, that it would not want the earlier versions either. But I have not done the process.
I suppose since you do not need to copy over the ntuser.ini file you don't need it, but the fact it is missing may be, as Bassfisher might be wondering, if that is your problem. On both my Windows 7 and Windows 8 systems the file is present, but shows as empty when I edit it. Since you have the "Show protected System Files" enabled, if you do not see ntuser.ini, you might open notepad and just save it as ntuser.ini in that directory or save the blank notepad file as a .txt and change the extension to .ini. Maybe it will solve your problem.