Best suggestion here is to try again. Clone the entire drive (including partitions you will want to delete later). Work on getting Windows up and running. Remember, from conventional hard drives to SSDs you are also dealing with differing technology. This can include problems with the restore process on some SSDs. They may act choppy and behave in a manner less efficient than expected.
Nonetheless, it can be done. However, your goal in changing the drive partition structure by using the restore as the mechanism is the primary reason for this problem. The partition configuration, Windows installation and its relation to being bootable, are all inter-related to the multi-partition structure you have on the original drive. (In English, I am saying you should just backup everything and restore everything if possible).
Once you have completed the restore process of all partitions, I then recommend you use a secondary utility, after booting into Windows, to remove the partitions you want to exclude. You will have a problem freeing up disk space if the partition you are trying to delete comes before the Windows partition, but this will get you up and running.
You should not try to delete the 100MB System Reserve partition, as this would create problems with the Windows installation on boot-up from recovery. If you find yourself absolutely needing to do this, concern yourself with this and all other partition modifications after the restore process is completed successfully.
You can go step by step in that process later on by first launching diskmgmt.msc in Windows and seeing what changes you can make there. Following that, if you determine more enhanced tools are necessary to delete partitions and re-arrange the drive, you can use dedicated partition management software or additional freeware utilities. Keep the backup and restore software to its primary function and then determine if you can get Windows to load. Remember that this is your primary objective for this task, and anything else should be prioritized as a secondary goal wherever possible.
This is because changing the partition structure while performing a restore will usually corrupt a bootable Windows installation beyond repair due to the number of changes that are made both sector-by-sector and to the partition structures themselves.
