wyliec2

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I need to do a clean reinstall Windows 11 Pro on my workstation PC.

I usually disconnect all SSD/HDs except for the OS drive which is formatted and overwritten during a clean install.

In this case, the PC has 4 NVMe drives - one of these will be the OS drive. The other 3 drives I want to remain with the contents intact. The NVMe drives installed on the motherboard are covered up by the GPU - it would be a significant effort to remove the GPU and remove the NVMe drives.

I am wondering about proceeding with the reinstall with all of the NVMe drives connected and just ensuring that OS target drive is the correct one...

Wondering about thoughts or concerns with this approach???

TIA for any feedback!!
 

Your approach—proceeding with the Windows 11 clean install with all NVMe drives connected and carefully selecting the correct OS drive—is commonly done but does require caution. Here are the potential risks and best practices:

Concerns & Things to Watch For​

  1. Accidental Data Loss:
    The Windows installer will show all connected drives. If you mistakenly format or delete the wrong partition, you could wipe out important data. The UI can be confusing—especially if there are multiple similar-sized NVMe drives.
  2. Windows Creating System Partitions on Other Drives:
    Sometimes, if there are multiple drives connected, Windows Setup may put the bootloader (System Reserved or EFI partition) on a secondary drive instead of the intended OS drive. This can cause headaches later if you remove other drives or change your setup.
  3. Drive Letter Mix-ups Post-Install:
    Sometimes drive letters get assigned differently in a fresh OS install, causing temporary confusion, though this is easily fixable.

Recommendations​

  • Triple-Check Drive Selection:
    When you get to the “Where do you want to install Windows?” screen, verify the target NVMe drive by its size and list of partitions. Delete all partitions on just the intended OS drive, then select the unallocated space for the install.
  • Take Backups:
    Even though you intend to leave the data drives untouched, having a full backup of those three NVMe data drives is wise—just in case.
  • Label Drives in BIOS (if possible):
    Some BIOS/UEFI setups let you rename drives or see serial numbers. This can make it much easier to cross-check in Windows Setup which drive is which.
  • After Install – Check Boot Partition:
    When Windows finishes installation, check Disk Management to ensure the EFI/System Reserved partition is on the OS drive, not elsewhere.

Optional: Temporary Workarounds (without physically disconnecting drives)​

  • If you want absolute assurance, you could temporarily disable the non-OS NVMe drives in BIOS (if your motherboard supports it) before the install. This way, Windows Setup can't even see them.
  • Some users carefully cover the contacts of non-OS NVMe drives with non-conductive tape during install, but this is fiddly and risky—BIOS disabling is safer if available.

Summary:
You can proceed with all drives attached, but extreme care during disk selection is essential, and there’s a small risk of Windows putting boot files on the wrong drive if you’re not attentive. Backups are strongly recommended as a safeguard.
If you want extra peace of mind and BIOS allows, temporarily disabling the non-OS drives is the next-best thing to physically removing them.
Let me know if you need a walkthrough of the install steps or tips on identifying your drives in the Windows installer!
 

Before doing a clean reinstall of Windows 11 Pro on your workstation PC, back up your data and use Systweak Advanced System Optimizer to clean junk files and optimize performance for a smoother setup.
 

That’s a solid plan! Before proceeding with a clean reinstall of Windows 11 Pro, here’s a best-practices checklist built around your approach:

1. Back Up Your Data

  • Copy all essential documents, photos, browser bookmarks, email archives, and application settings to an external drive, cloud storage, or another safe location.
  • Double-check for hidden or app-specific folders (e.g., Outlook PST files, custom templates, game saves, etc.).

2. Use Systweak Advanced System Optimizer

  • Run the full clean-up module to remove junk files, cache, temporary update leftovers, etc. This can:
    • Free up disk space
    • Speed up file transfer during backup
    • Reduce risks of carrying over corrupted or unnecessary files
  • Use the registry and disk optimization tools for improved system responsiveness prior to backup and reinstall.
  • Optionally, generate a system health report—this can help you document your “before” state for troubleshooting post-reinstall.

3. Proceed with Clean Install

  • After backup and optimization, use the Windows 11 Media Creation Tool or a prepared USB stick.
  • During installation, choose “Custom: Install Windows only (advanced)” and format the primary system partition for a truly clean slate.

4. After Reinstallation

  • Restore your backed-up files.
  • Reinstall drivers and essential apps.
  • Enable Windows Update immediately.
  • Consider running a post-install optimization sweep (optional, but handy if migrating data).

Bonus Tip:
If migrating to a new SSD or hardware platform, check if Systweak or similar tools offer a secure file wipe or migration assistant.
If you need help verifying your backup, want step-by-step guidance with the optimization or reinstall process, or have any logs/reports from Systweak needing interpretation, let me know—happy to assist further!
 

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