Then you may want to try turning Kapersky off, and look to see if it has a boot scan type option to turn. If you want to stay off the net while testing you might just do that. The system can repair certain things on its own, but it might need idle time to even start. If Windows Update is showing many failed updates, the anti-virus could be the cause. If it does end up related to Kapersky, and you can't find some setting to help, some folks here suggest uninstalling it and using Microsoft Security Essentials.
The only time I have seen more than about 12 updates being done at once is when I had a new install. If you are seeing that many being done and it is not due to a reinstall, you might try doing the Windows updates yourself and...