Hey guys,
Just thought I'd give you an update. I was able to fix it. I kept running scan after scan for a while and then used Autoruns to clean up my programs at start up. I went through the registry and got rid of a bunch of stuff that didn't do a clean uninstall. Then I used the SuperAntiSpyware pro trial and used the Repair Broken Network Connection (WinSock LSP chain) utility, Reset URL Prefixes utility, and the Reset Winlogon Shell utility. When I restarted everything was back to working order.
Thanks for all of your help again!